Showing posts with label curriculum. Show all posts
Showing posts with label curriculum. Show all posts

Thursday, February 4, 2016

The Primate Family Tree: A classroom activity in evolution, adaptable for all ages

Feel free to email me to request the document (with all this text and all these figures) which is easier to work with. holly_dunsworth@uri.edu

In this activity, students will…
Observe and describe the similarities and differences between primates and other familiar mammals, and also the similarities and differences among primates.
Classify primate species into groups (superfamily and above). 
Transform Linnaean classification into evolutionary theory by merely changing the question from How do primates look similar and different from one another? to Why do primates look similar and different from one another?
Build a primate “family” tree by turning Linnaean classification into phylogeny (or evolutionary tree-thinking) to describe how common ancestry and change over time explain both similarities and differences among primates.

How old are the students? 
5-105* 
*Prior to about age 8, teachers will need to riff quite creatively off track from this (for one, because reading the Primate Taxonomy Table may be very difficult for younger students), but I include those earlier ages because I believe that teachers of those age groups can find a way to use this lesson if they’d like to. It's possible that just knowing how to read is enough to do a stripped down version of this activity, which includes children even younger than 5. I have used this activity successfully with students aged 8-25. For upper-level anthropology courses I've used it as an ice-breaker to kick off the semester (with students who have a background in evolutionary thinking already).

How long will it take? 
30 minutes minimum (much more depending on detail you wish to cover)

What materials?
Color pictures of a diverse array of primates - approximately 3-5 times as many pictures as students. Too many is better than too few. Rip them out of old textbooks and laminate for durability. Print them off the Internet (arkive.org is one of the best sources) and laminate for durability. Make sure to have at least two different pictures of the same species for many of the species you include. Label most of them with the common names under “examples” on the chart for Part 2 (e.g. “baboon”). But a fraction may be only labeled with geographic region, scientific name, or nothing at all.  Explanation is in the instructions below. Specific sources of primate photos for printing are listed in Appendix A.
Pencil – 1 per student
Note cards -  1 per student (for them to draw a self-portrait or a symbol to represent themselves)
Poster paper, or large sheets of paper – 6, one for each superfamily on the Primate Taxonomy Table (below)
Tacky gum, reusable tape, or some other ingenious sticky tool that can both hold primate pictures to the posters and also be removed and moved to different posters when students change their minds. 
Handout for students (see options below; must at minimum include Part 2: Primate Taxonomy Table)

Teacher Instructions

Part 1. (3 MINUTES minimum) DISCUSS CLASSIFICATION
Using the resources under Part 1 of the materials below, hold a discussion about classification. Don’t talk about relatedness or common ancestry! And especially don’t talk about evolution! (Next, in Part 2, the taxonomic terminology they will use, like “family,” will encourage them to think evolutionarily, hopefully, and this will come into play later in the activity.)  They will already be familiar with how like is grouped with like—I often use sock and underwear drawer analogy, grocery store organization works too. Stick to primates if you’d like, but if you go broader, make sure to end your discussion with primates, including humans. Make sure to explain how (Linnaean) taxonomy/classification works. That is, simply/broadly (or complicated/specifically if you’d like) describe the methods—the use of comparative anatomy and homology and also the binomial species name for the smallest, most exclusive group within ever-more inclusive groups going up to the Kingdom level.

Part 2. (10 MINUTES minimum) CLASSIFY THE PRIMATES INTO SUPERFAMILIES
Hang a poster for each superfamily along the wall in no particular order, lay out a pile of the photos in no particular order. Students get up out of their chairs, and using the Primate Taxonomy Table (below) they stick each primate picture to a poster labeled with the superfamily to which they think it belongs. They are able to do this without any knowledge of primates because you have labeled most of the pictures with “baboon”, for example. They can go to the table on the handout and see that baboons belong in the superfamily “cercopithecoidea” and stick the photo to that poster. Unlabeled baboons should look similar to labeled ones and they should also be sticking those to the cercopithecoidea poster if they are carefully observing and are engaged in the activity. Make sure they stick their own “human” cards to a poster too.  Hopefully they will respectfully work together and move others’ around if they think they have a better case for a different classification of a particular primate.  

Primate Taxonomy Table (handout).
Email me for a file you can work with more easily (holly_dunsworth@uri.edu)

Part 3. (5 MINUTES minimum) STUDENTS SHARE THEIR REASONING FOR THEIR CLASSIFICATION
Lead the students through a tour of the features that unite the primates into each of the superfamilies. First ask them to describe the similarities among all the primate superfamilies (a quick review of Part 1). Then ask them to describe the differences they can see between the superfamilies: what makes hominoids separate from cercopithecoids, etc?  It’s not imperative, but I recommend starting with the primates that share the most with humans (hominoidea) then going to the cercopithecoidea, and so on. This may appear to be difficult because they may observe overall (super) family resemblance but not be able to describe any more detail than that, which is fine! Using the resources under Part 3 below, you can provide details of the differences between the superfamilies, both that are visible in the pictures and that are not. 

Part 4. (2 MINUTES minimum) CHANGE THE QUESTION FROM HOW DO PRIMATES VARY? TO WHY DO PRIMATES VARY? 
Challenge students to explain the patterns of similarities that make all these creatures primates and that, for example, unite the hominoids, the cercopithecoids, etc..., while also explaining the differences that make each species unique and each superfamily unique.  Hopefully, with very little help from you, they will arrive at the idea that relatedness explains it. Family history, on a larger scale than our own families, but the same kind of thing. Common ancestry and change over time since common ancestors. Evolution plain and simple.  

Part 5. (10 MINUTES minimum) BUILD A PRIMATE TREE and DISCUSS ITS MEANING. 
There are many ways to do this and showing more than one way would be great, but one way is to put the known phylogenetic structure, the branches of the tree for the superfamilies (see resources below) on the wall or board and have them deduce where the superfamilies go and stick the posters to those branches. Another way, for older students, is to have them figure out the relatedness of superfamilies first, starting with humans and hominoids and hypothesizing which are more and more distantly related based on increasing differences. Another is to merely show them how to walk through the table for Part 2, and change it into a hypothesis for phylogenetic/evolutionary history, with lineages diverging where each level of taxonomy divides things further into more exclusive groups. So show them how to draw time and descent lines around that evolution-free taxonomy (classification table for Part 2) that they already have and they’ll arrive at.. dun-dun-DUN evolution! I prefer to draw the students’ hypothesized tree like a big oak tree (with a streps/haplorhine split in the trunk deep down near the bottom) on the wall, and to stick the posters at the ends of the branches. But it’s obviously up to teachers and whether they have a big wall to draw on! I cover my wall in paper first so that I can draw the big tree. 


Teacher Resources and Optional Handout Materials
Teachers: Pick and choose what you’d like to include in your handout, depending on what you will cover with your particular students (depending on age, time, goals, etc…). Be careful not to share any handouts too soon and spoil the opportunity for students to think first, if that’s what you have time for and are going for. 

Part 1
  • Where do humans fit in the classification of life on Earth? (link)
  • How do we make these categories? We ask, ‘What’s similar” of the anatomy, when comparing different species.  That is we look to homologous structures.  A great example is the tetrapod forelimb. (link)

  • What makes a primate a primate? (link)

Part 2
Lemuroidea
Nose: wet (hence the name strepsirrhine)
Geographic region: Madagascar
Tail present: yes
Activity: Some nocturnal, some diurnal
Teeth: Many more than we have, some shaped like comb for grooming fur
Body size: Small but variable from the smallest primate alive (<< 1 lb.) to ones as big as big pet cats (20 lbs.)

Lorisoidea
Nose: wet (hence the name strepsirrhine)
Geographic region: Sub-Saharan Africa and Southeast Asia
Tail present: yes and no
Activity: nocturnal
Teeth: Many more than we have
Body size: small

Tarsioidea
Nose: dry (hence the name haplorhine) 
Geographic region: Southeast Asia
Tail present: yes
Activity: nocturnal
Teeth: Many more than we have
Body size: small

Ceboidea
Nose: dry (hence the name haplorhine) 
Nostrils: flat and facing out to the side (hence the name platyrrhine)
Geographic region: Central and South America
Tail present: yes (and some are even prehensile!)
Activity: Most diurnal, some nocturnal
Teeth: four more than humans (one extra premolar/bicuspid in each quadrant of mouth compared to us)
Body size: Variable, with some small (like pygmy marmosets) but the largest, the spider monkey, is 25 lbs.

Cercopithecoidea
Nose: dry (hence the name haplorhine) 
Nostrils: facing down (hence the name catarrhine)
Geographic region: Asia, Southeast Asia, and Africa (all sub-Saharan except the Barbary macaque of Morocco and Gibraltar)
Tail present: yes (but 2-3 species are no or have very small stubs)
Activity: diurnal
Teeth: same number as humans
Body size: Many, including most macaques and baboons, weigh more than any ceboids. Some mandrills weigh over 100 lbs.!

Hominoidea
Nose: dry (hence the name haplorhine) 
Nostrils: facing down (hence the name catarrhine)
Geographic region: Southeast Asia (gibbons, siamangs, orangutans); Sub-Saharan Africa (gorillas, chimpanzees, bonobos); Worldwide (humans)
Tail present:  no
Activity: diurnal
Teeth: same number as humans
Body size: Although gibbons and siamangs are the smallest of the group, this group is the largest in body size and weight of all primate superfamilies and includes gorillas, the largest of all primates which can weigh 400 lbs.!


Part 4

Evolution and phylogenetic thinking is just family history writ large.

Part 5. The Primate Family Tree

Here is an example (one hypothesis, if you will) of a primate phylogeny or phylogenetic tree or evolutionary tree. 



Here's guidance on how to turn Part 2’s table into a phylogeny with students.


Then here it is, stripped down and rotated...



Appendix A.
Sources for primate pictures

Lemuroidea

Lorisoidea

Tarsioidea

Ceboidea

Cercopithecoidea

Hominoidea
Humans: students draw a personal sign, symbol, or self-portrait

Tuesday, June 2, 2015

Imagine no mutation.

Imagine no mutation.
I wonder if you can.
No means for new variation.
A creationist's view of Man.
Imagine all the people
learning it this way.

Boo-hoo, ewww.

I found out this semester that although most of my students in "Human Origins" had learned about natural selection, that relatively few of them had learned about mutation. 

Huh? Are people still stuck on Darwin? Apparently. 

Mutation requires a little bit of genetics to understand, but c'mon! Natural selection makes no sense without it. None.

And what's more, natural selection cannot be the all-powerful force that popular culture might have us believe when mutation is accounted for. Evolution is so much more fascinating with even a basic understanding of mutation. In this molecular-clock, whole-genome-sequencing era, how can anyone teaching and learning evolution not have at least a basic understanding of chance, perpetual accumulation of mutations?

We've all, each and every one of us, got many de novo mutations. So our genomes are distinct from our parents' and siblings', not just because of genetic recombination of our grandparents' genomes when our parents' eggs and sperms were built, but because of unique mutations that occurred while making those germ cells or in the early stages after their union.

That this constant change in lineages is occurring with each reproductive event is proof that natural selection is a largely tolerant process, perpetually allowing perpetual evolution by mutation.

(And, maybe natural selection has much less, and mutation has much more, to do with speciation than many have assumed.)

What happens to each and every one of our unique mutations, whether or not they live on in our offspring, whether or not they play a role in adaptation, depends on quite a bit of luck, partly because of the "Law of Segregation":

A Mutation's Future
Click to enlarge. Email me for original file that you can modify: holly_dunsworth@uri.edu

For a description of evolution that incorporates perpetual mutation, check out "Evolution is the only natural explanation. And it's all we need."

Wednesday, June 11, 2014

A first run at a textbook-free 'Introduction to Biological Anthropology'

This post has been updated since it was first published.

None of the textbooks share my curricular vision or path. And I believe that the path I take with students is instrumental to their learning evolution and to overcoming the gripping misconceptions. So I'm all done with textbooks for "Introduction to Biological Anthropology" and I've posted my thoughts on this before:
As promised in the last link, here's a serious draft of what I'll be implementing in Spring 2015 when I'm back to the classroom after having a baby.

It's for APG 201: Human Origins, a fundamental major requirement and a course that fulfills 3 general education credits in the natural sciences for anyone wishing to graduate from URI. I teach to a small auditorium of 120 students both Fall and Spring semesters every year, 50 minutes each meeting, three times a week per semester. Sometimes I have TAs, sometimes I don't. (We don't have a graduate program.)

Notice how I have the students make observations first (mostly on primates) before we explain them with evolution. And at first, evolution is only about common ancestry and change over time (i.e. even though we bring in Darwin at this point, we do not talk about  natural selection or adaptation). Then evolution's about inherited continuity with recombination and mutation, then it's about trait complexity, and then, and only then, it's about processes like drift and selection.

I've decided that even though it's a lot of fun, and even though I do introduce sexual selection, there's just no room in this introductory course for primate sex and reproductive strategies, the evolution of ours, and reconstructing these things in our ancestry.  I'll be relegating all that content to my "Sex and Reproduction in Our Species" (aka The Baby Makers) course, instead.

I've been increasing homework assignments, in frequency and intensity, over the past few years but this will be, by far, the most I've had them do for this course. I like to have them struggle through things on their own before we tackle them in class, which is why so may assignments are due on the day we're slated to cover the same topic. This means, I don't grade for complete accuracy. What's more, students clearly aren't reading and writing enough (in general, in life) to meet my standards for thinking and thought expression in my courses, so this journal approach is how I'm addressing that problem. Because it would be nearly impossible to deal with in such a large course, I won't collect their daily assignments. Instead, I'll have them add assignments to their journals which I will spontaneously check only a few times. I've issued many of these assignments in the past, so I'm already aware of what the students will write and have built the course in such a way that anticipates and addresses the obstacles they face as it goes along. "Lecture resources" are not assigned readings but are highly recommended study resources, especially for students who were not satisfied with our discussion of the content for a particular day (either because they didn't understand or they want to learn more) or for students who missed class that day.

Here's the course (minus the worksheets and my in-class materials, including handouts with content that's not covered fully by the readings/resources). Sakai, for anyone unfamiliar, is like Blackboard and other on-line aids for courses. Sorry for not making the links neater but this is how I've formatted the syllabus for maximum clarity. The syllabus looks great, yet transferring it here looks awful. I hope you can forgive me and also get something out of this! Day 1.1 might look unconventional but it will light them up before we go over the course properly, and I'm always looking for excuses to bring one of my wonderful dogs to class with me.



APG 201: Human Origins
A textbook-free curriculum
Assignments are due on the day they're listed
Books you'll need for this course:
1. Your Inner Fish - Neil Shubin
2. Paleofantasy - Marlene Zuk

Unit 1.
This view of life. Our place in nature.
What is the anthropological perspective? What is the scientific approach to understanding human origins? What is a human? What are human traits? How do humans fit on the Tree of Life?

1.1 – Dog origins
Lecture Resources
·        The Woof at the Door - Shipman (American Scientist)
·        How to Build a Dog - Ratliff (National Geographic)
·        Genetics of Dog Breeding - Adams (Nature Education)
Journal Assignment
With at least one word, term, or phrase from today’s class, start a glossary. Whenever a word, term, or phrase is used in class that you think is important, jot it down, and define it. Whenever something's said in class that you’re unfamiliar with, jot it down and then go look it up (or ask a peer or me about it), and define it. 

1.2 – Overview of course
Journal Assignment
·        In a page or more: Without looking anything up or discussing with anyone else, writing just from your own mind at present... What is evolution?

1.3 – Doing biological anthropology
Assigned reading/viewing
·        What is it like to be a biological anthropologist? A Field Paleontologist's Point of View – Su (Nature Education) http://www.nature.com/scitable/knowledge/library/what-is-it-like-to-be-a-59719064
·        Notes from the Field: A Primatologist's Point of View – Morgan (Nature Education) http://www.nature.com/scitable/knowledge/library/notes-from-the-field-a-primatologist-s-54334509
·        Expedition Rusinga (video; 8 mins)  http://vimeo.com/50614968
·        YIF: How Do We Know When Our Ancestors Lost Their Tails? (video; 4 min) http://video.pbs.org/video/2365211775/
Journal Assignment
·        In a page or more: Why do biological anthropology?
Lecture Resources
·        The ape in the trees – Dunsworth (The Mermaid’s Tale)
·        Metabolic hypothesis for human altriciality – Dunsworth et al. (PNAS) http://www.pnas.org/content/109/38/15212.short
·        Challenges to human uniqueness: bipedalism, birth and brains - Roberts and Thorpe (J Zool) - Posted on Sakai

1.4 – The scientific process
Assigned reading/viewing
·        Understanding science: How Science Works, pages 1-21; starts here: http://undsci.berkeley.edu/article/0_0_0/howscienceworks_01
Journal Assignment
·        Scientific Process worksheet - Located at end of syllabus

1.5 – Linnaeus and the Order Primates
Assigned reading/viewing
·        Arkive: http://www.arkive.org/
·        Animal Diversity Web: http://animaldiversity.ummz.umich.edu/
·        Primate Factsheets: http://pin.primate.wisc.edu/factsheets
·        Encyclopedia of Life: http://eol.org/
·        Time Tree: http://www.timetree.org/
Journal Assignment
·        Primate Expert worksheet - Located at end of syllabus
Lecture Resources
·        Characteristics of Crown Primates – Kirk (Nature Education) http://www.nature.com/scitable/knowledge/library/characteristics-of-crown-primates-105284416

1.6 – Overview of primates
Assigned reading/viewing
·        Many primate video clips –Posted on Sakai
Journal Assignment
·        In a page or more: Write about your viewing experience, for example, you might write about being surprised that some of these creatures are primates or how some behaviors are surprisingly human.
Lecture Resources
·        Old World monkeys – Lawrence and Cords (Nature Education)

1.7 – Primates: Encephalization and locomotion
Assigned reading/viewing
·        Many primate locomotion video clips –Posted on Sakai
Journal Assignment
·        In a page or more: Without looking at the lecture resource, come up with some categories for the different types of primate locomotion, give those categories names and list which species fall into them.
Lecture Resources
·        Primate locomotion – Gebo (Nature Education)

1.8 – Primates: Diet, tool use, and communication
Assigned reading/viewing
·        ·        http://www.eskeletons.org/
·        http://www.efossils.org/
The Human Spark 2 (video; 55 mins) https://www.youtube.com/watch?v=roqTXf5UNyc&feature=kp
Journal Assignment
·        Anatomy worksheet - Located at end of syllabus
·        In a page or more: Summarize the film, highlighting something you already knew and also something you learned that was brand new to you. What is the human spark?
Lecture Resources
·        Chimps with everything: Jane Goodall's 50 years in the jungle – McKie (The Guardian) http://www.theguardian.com/science/2010/jun/27/jane-goodall-chimps-africa-interview

1.9 – Primates: Sociality
Assigned reading/viewing
·       Peace Among Primates – Sapolsky (The Greater Good) http://greatergood.berkeley.edu/article/item/peace_among_primates
Journal Assignment
·        In a page or more: Reflect meaningfully on the reading, relating it to your life is fine but not required.
Lecture Resources
·        What Influences the Size of Groups in Which Primates Choose to Live? – Chapman and Teichroeb (Nature Ed)
·        Primate Communication – Zuberbuhler (Nature Ed)
·        Primate Sociality and Social Systems – Swedell (Nature Ed)
·        Primates in communities – Lambert (Nature Ed)

1.10 – Evolution and Darwin’s evidence
Assigned reading/viewing
·        Three parts from The Autobiography of Charles Darwin:
o   "Voyage of the 'Beagle'" (p. 71-81 ) and "An account of how several books arose" (p. 116- 135) and "An estimation of my mental powers" (p. 136-145)
Journal Assignment
·        In a page or more: What circumstances or experiences influenced Darwin's thinking?
Lecture Resources
·        Evolution Is Change in the Inherited Traits of a Population through Successive Generations – Forbes and Krimmel (Nature Ed)
·        Charles Darwin spotlight (1809-1892) http://www.nature.com/scitable/spotlight/charles-darwin-7567158

1.11 – The evidence that Darwin wishes he had
Assigned reading/viewing
·        Your Inner Fish, Chapter 1: Finding Your Inner Fish - Shubin
·        YIF: Amazing Places, Amazing Fossils: Tiktaalik (video; 5 mins) https://www.youtube.com/watch?v=T2vKlEUX7DI
·        Your Inner Fish, Chapter 2: Getting a Grip - Shubin
·        YIF: The Ancient History of the Human Hand (video; 4 mins) https://www.youtube.com/watch?v=RUL8hKDdY84
Journal Assignment
·        In a page or more: What does Shubin mean by "your inner fish"? What's the connection between a fish’s fin and your hand?

1.12 - Phylogeny
Journal Assignment
·        Phylogeny worksheet - Located at end of syllabus
Lecture Resources
·        Reading a phylogenetic tree – Baum (Nature Ed)
·        Trait Evolution on a Phylogenetic Tree – Baum (Nature Ed)

1.13 – The human primate (encephalization, locomotion, diet, tool use, communication, sociality)
Lecture Resources
·        Overview of hominin evolution – Pontzer (Nature Ed)


Unit 2.
Explaining the similarities and differences. How evolution works.
Why are we like our parents but not exactly? Same for other species: why are we like them but not exactly? How did human traits evolve? What is our "inner fish" etc.? What was the last common ancestor (LCA) between humans and chimps like? How do we know when and where it lived?

2.1 – Inheritance: Chromosomes
Assigned reading/viewing
·        Your Inner Fish, Chapter 3: Handy Genes - Shubin
·        Your Inner Fish, Chapter 4: Teeth Everywhere - Shubin
·        YIF: The Evolution of Your Teeth (video; 3 mins) https://www.youtube.com/watch?v=ohq3CoOKEoo
·        Your Inner Fish, Chapter 5: Getting ahead - Shubin
·        YIF: Our Fishy Brain (video; 2.5 mins) http://video.pbs.org/video/2365207797/
Journal Assignment
·        In a page or more: What did you learn about how to do paleontology from the reading? What does he mean by your "inner shark"?
Lecture Resources
·        Developing the Chromosome Theory – O’Connor (Nature Ed)
·        Genetic Recombination – Clancy (Nature Ed)

2.2 – Inheritance and gene expression: DNA, RNA, proteins
Assigned reading/viewing
·        Your Inner Fish, Chapter 6: The Best-Laid (Body) Plans - Shubin
·        Your Inner Fish, Chapter 7: Adventures in Bodybuilding - Shubin
Journal Assignment
·        In a page or more: What are  Hox genes and what do they have to do with linking a fruit fly to you? What is one benefit of being a sponge?
Lecture Resources
·        What is a Gene? Colinearity and Transcription Units – Pray (Nature Ed)
·        RNA functions – Clancy (Nature Ed)
·        Hox Genes in Development: The Hox Code – Myers (Nature Ed)

2.3 – Inheritance and gene expression: Mendelian genetics
Assigned reading/viewing
·        Your Inner Fish, Chapter 8: Making Scents - Shubin
·        Your Inner Fish, Chapter 9: Vision - Shubin
·        YIF: Finding the Origins of Human Color Vision (video; 5 mins) http://video.pbs.org/video/2365207765/
·        Your Inner Fish, Chapter 10: Ears - Shubin
·        YIF: We Hear with the Bones that Reptiles Eat With (video; 4 mins) http://video.pbs.org/video/2365207244/
Journal Assignment
·        In a page or more: Is it fair to say that when you smell something, that something is touching your brain? Why is it called the eyeless gene if you can have it and still have eyes? How does hearing work? What does your ear do besides hear, and how? What does drinking lots of alcohol do to your ears?
Lecture Resources
·        Gregor Mendel and the Principles of Inheritance – Miko (Nature Ed)
·        Mendelian Genetics: Patterns of Inheritance and Single-Gene Disorders – Chial (Nature Ed)

2.4 - The reality of inherited traits = Complexity; Hox genes and development
Assigned reading/viewing
·        Things Genes Can’t Do – Weiss and Buchanan (Aeon)
·        Insanity: genes 'versus' environment as causes – Weiss (The Mermaid’s Tale)
Journal Assignment
·        In a page or more: Reflect meaningfully on these articles and highlight something that you already knew, but also the things that you learned that are brand new to you.
Lecture Resources
·        Phenotypic Range of Gene Expression: Environmental Influence – Lobo and Shaw (Nature Ed)
·        Genetic Dominance: Genotype-Phenotype Relationships – Miko (Nature Ed)
·        Pleiotropy: One Gene Can Affect Multiple Traits – Lobo (Nature Ed)
·        Polygenic Inheritance and Gene Mapping – Chial (Nature Ed)
·        What Works Works. But What Works?: Genomes as works in progress – Weiss (Evol Anth) – Posted on Sakai

2.5 - Population genetics and evolution
Assigned reading/viewing
·        Paleofantasy , Intro - Zuk
·        Paleofantasy,  Chapter 1: Cavemen in Condos - Zuk
Journal Assignment
·        Scenario worksheet, 1 - Located at end of syllabus
·        In a page or more: What's the point of Zuk’s book? How familiar are you with "paleo" diet and other kinds of lifestyle choices that fall under that umbrella?
Lecture Resources
·        Mutations Are the Raw Materials of Evolution – Carlin (Nature Ed)
·        Natural selection, genetic drift and gene flow do not act in isolation in natural populations – Andrews (Nature Ed)
·        Neutral Theory: The null hypothesis of molecular evolution – Duret (Nature Ed)

2.6 - Natural selection
Assigned reading/viewing
·        Paleofantasy,  Chapter 2: Are We Stuck? - Zuk
Journal Assignment
·        In a page or more: What does Zuk mean by, "are we stuck?" and what's the answer?
Lecture Resources
·        Negative selection – Loewe (Nature Ed)

2.7 - Sexual selection, Modern Synthesis, and more on epigenetics
Assigned reading/viewing
·        Paleofantasy,  Chapter 3: Crickets, sparrows, and Darwins- or, evolution before our eyes - Zuk
Journal Assignment
·        Scenario worksheet, 2 - Located at end of syllabus
·        In a page or more: How can natural selection explain the silent crickets?
Lecture Resources
·        Sexual selection – Brennan (Nature Ed)

2.8 - Recent human evolution: Malaria resistance and lactase persistence
Assigned reading/viewing
·        Paleofantasy,  Chapter 4: The perfect paleofantasy diet: Milk - Zuk
Journal Assignment
·        Wisdom Teeth worksheet - Located at end of syllabus
·        In a page or more: How can natural selection explain lactase persistence?
Lecture Resources
·        Natural Selection: Uncovering Mechanisms of Evolutionary Adaptation to Infectious Disease – Sabeti (Nature Ed)

2.9 - Understanding evolutionary mechanisms; Building evolutionary scenarios
Assigned reading/viewing
·        Evolution is the only natural explanation – Dunsworth (The Mermaid’s Tale)
·        The F-words of Evolution  – Dunsworth (The Mermaid’s Tale)
·        Another F-word of evolution  – Dunsworth (The Mermaid’s Tale)
http://ecodevoevo.blogspot.com/2011/05/another-f-word-of-evolution.html
·        Mutation not natural selection drives evolution –  Tarlach (about Nei; Discover Mag)
Journal Assignment
·        Drift vs. Selection worksheet - Located at end of syllabus
·        In a page or more: Reflect on what you already knew and, more importantly, what you learned from each of the readings that's new.

2.10 - Species and speciation
Assigned reading/viewing
·        Primate Speciation: A Case Study of African Apes – Mitchell and Gonder (Nature Ed)
Journal Assignment
·        In a page or more: What are some hypotheses for how or why the African apes, including humans, diverged? Why might gene trees and species trees not agree with one another?
Lecture Resources
·        Why should we care about species? – Hey (Nature Ed)
·        Speciation: The origin of new species – Safran (Nature Ed)
·        The maintenance of species diversity – Levine (Nature Ed)
·        Macroevolution: Examples from the Primate World – Clee and Gonder (Nature Ed)

2.11 - Genomics, fused chromosomes, molecular clocks, and the LCA
Assigned reading/viewing
·        Lice and Human Evolution (video; 11 mins) http://video.pbs.org/video/1790635347/
·        Time Tree: http://www.timetree.org/
Journal Assignment
·        Speciation and molecular clocks worksheet - Located at end of syllabus
Lecture Resources
·        The Onion Test – Gregory (Genomicron) http://www.genomicron.evolverzone.com/2007/04/onion-test/
·        The Molecular Clock and Estimating Species Divergence – Ho (Nature Ed)

Unit 3.
Evolving humans, past and present. Our extinct hominin ancestors and relatives. Modern human origins and variation. The cultural controversy over evolution.
How did human traits evolve? How and why do humans vary? Should we look to our ancestors as a lifestyle guide? Are we still evolving? Why is human evolution misunderstood and why is it controversial?

3.1 - Fossils, geology, dating methods; Extinction
Assigned reading/viewing
·        Planet without apes? – Stanford (Huffington Post)
Journal Assignment
·        In a page or more: What could lead to a future on Earth without apes? What kinds of evidence would such a process leave behind for future humans to use to explain why apes went extinct?
Lecture Resources
·        Dating Rocks and Fossils Using Geologic Methods – Peppe (Nature Ed)
http://www.nature.com/scitable/knowledge/library/dating-rocks-and-fossils-using-geologic-methods-107924044
How to Become a Primate Fossil – Dunsworth (Nature Ed; in press) – Posted on Sakai

3.2 - Primate fossil record; Origins and evolution of bipedalism
Assigned reading/viewing
·        Dating Rocks and Fossils Using Geologic Methods – Peppe (Nature Ed)
Journal Assignment
·        Geology worksheet - Located at end of syllabus
Lecture Resources
·        Milankovitch Cycles, Paleoclimatic Change, and Hominin Evolution – Campisano (Nature Ed)
·        Studying function and behavior in the fossil record – Benton (PLOS Biology)

3.3 - Bipedalism, diet: Sahelanthropus, Orrorin, Ardipithecus, Australopithecus, Paranthropus
Assigned reading/viewing
·        Lucy – Dunsworth (Icons of Evolution) – Posted on Sakai
·        Desktop Diaries: Tim White (video; 7 mins)
·        YIF: Ancient Human Ancestors: Walking in the woods (video; 4 mins) http://video.pbs.org/video/2365207936/
·        YIF: Lucy (video; 5 mins) https://www.youtube.com/watch?v=m8Lkk6u-wQM
·        Trowelblazers: http://trowelblazers.tumblr.com/
·        An Unsuitable Job for a Woman: http://www.ellencurrano.me/blog/
Journal Assignment
·        In a page or more: Describe something monumental (either for paleoanthropology or for you personally) to be learned or realized thanks to Lucy. Then summarize each of the films. For the two websites/blogs, choose one featured woman from each, and briefly describe at least one of her contributions to humankind.
Lecture Resources
·        The Earliest Hominins: Sahelanthropus, Orrorin, and Ardipithecus - Su (Nature Ed)
·        The "Robust" Australopiths – Constantino (Nature Ed)
·        Paleoecology and Paleoenvironment: a Case Study of Plio-Pleistocene Mammals from Laetoli – Kovarovic (Nature Ed)

3.4 – Technology and encephalization: Homo habilis
Assigned reading/viewing
·        Paleofantasy,  Chapter 5: The perfect paleofantasy diet: Meat - Zuk
·        YIF: Ancient Hands, Ancient Tools (video; 5 mins) https://www.youtube.com/watch?v=5_ew9J8lpwo
Journal Assignment
·        In a page or more:  Can you name something at the grocery store that could count as "paleo"? Why did I ask this question?
Lecture Resources
·        A Primer on Paleolithic Technology – Ferraro (Nature Ed)
·        Evidence for Meat-Eating by Early Humans – Pobiner (Nature Ed)

3.5 – Ecology and encephalization: Homo erectus
Assigned reading/viewing
·        Paleofantasy,  Chapter 6: Exercising the paleofantasy - Zuk
Journal Assignment
·        In a page or more: Is exercising in a "paleo" way good, bad, both, or neither?
Lecture Resources
·        Homo erectus - A Bigger, Smarter, Faster Hominin Lineage – Van Arsdale (Nature Ed)

3.6 – Sociality and encephalization: Neanderthals
Assigned reading/viewing
·        What Happened to the Neanderthals? – Harvati (Nature Ed)
Journal Assignment
·        In a page or more: What happened to the Neanderthals?
Lecture Resources
·        Archaic Homo sapiens – Bae (Nature Ed)
·        Neanderthal Behavior – Monnier (Nature Ed)

3.7 - Sociality and encephalization: Modern Homo sapiens 
·        Research Projects due today
Lecture Resources
·        The Transition to Modern Behavior – Wurz (Nature Ed)


3.8 - Origins and evolution of speech and language
Assigned reading/viewing
·        The Human Spark 1 (video; 55 mins) https://www.youtube.com/watch?v=2HgVl27j4Mk
Journal Assignment
·        In a page or more: Summarize the film, highlighting something you already knew and also something you learned that was brand new to you. What is the human spark?
Lecture Resources
·        Tracking the Evolution of Language and Speech: Comparing Vocal Tracts to Identify Speech Capabilities – Lieberman and McCarthy (www.museum.upenn.edu/expedition)

3.9 - Models of human origins and geographic dispersal; Ancestry genetics
Assigned reading/viewing
·        From the Belgian Congo to the Bronx Zoo (NPR)
·        A True and Faithful Account of Mr. Ota Benga the Pygmy, Written by M. Berman, Zookeeper – Mansbach
·        Human Races May Have Biological Meaning, But Races Mean Nothing About Humanity – Khan (Discover blogs)
Journal Assignment
·        In a page or more: (Regarding Ota Benga: The first is a short article and audio news piece and the second is fiction based in fact.) Why was Ota Benga brought to the U.S.? Why was Ota Benga brought to the Bronx Zoo? Regarding issues that Ota Benga’s story raised, what do religious and evolutionary perspectives have in common? Why doesn’t a story like Ota Benga’s take place in 2014? Do you agree or disagree with Khan about races having biological meaning? Do you agree or disagree with Khan about races meaning nothing about humanity? Why or why not (for both)? What would you like to learn more about as a result of reading Khan's piece? Describe how you would go about doing that.
Lecture Resources
·        Anthropological genetics: Inferring the history of our species through the analysis of DNA – Hodgson and Disotell (Evolution: Education and Outreach)
·        Testing models of modern human origins with archaeology and anatomy – Tryon and Bailey (Nature Ed)
·        Human Evolutionary Tree – Adams (Nature Ed)
·        Paternity Testing: Blood Types and DNA – Adams (Nature Ed)

3.10 - Race and evolution's P.R. problem
Assigned reading/viewing
·        Understanding Race: http://www.understandingrace.org/
·        In the Name of Darwin – Kevles (PBS) http://www.pbs.org/wgbh/evolution/darwin/nameof/
·        The visible colors: and the falseness of human races as natural categories – Weiss (The Mermaid’s Tale)
Journal Assignment
·        Peruse the whole site then take the quiz at Understanding Race and prove that you completed it by listing the correct answers (just letters is fine)
·        In a page or more: What is eugenics and what’s it got to do with Darwin? Genes contribute to performance on IQ tests (and others like SAT), but what else contributes to performance on those tests? Does social Darwinism contribute to the cultural controversy over accepting and teaching evolution in the U.S.A.? Why doesn't the color metaphor work for categorizing humans?

3.11 - Race and the evolution of human skin color variation; Future evolution
Assigned reading/viewing
·        Paleofantasy,  Chapter 10: Are we still evolving? - Zuk
·        We are not the boss of natural selection – Dunsworth (io9)
Journal Assignment
·        In a page or more: Are we still evolving?
Lecture Resources
·        Human Skin Color Variation (NMNH): http://humanorigins.si.edu/evidence/genetics/skin-color

3.12 - The cultural controversy over evolution; Overcoming misconceptions
Assigned reading/viewing
·        Your Inner Fish, Chapter 11: The Meaning of It All - Shubin
·        Evolution reduces the meaning of life to survival and reproduction... Is that bad? – Dunsworth (The Mermaid’s Tale)
Journal Assignment
·        In a page or more: After re-reading your very first journal entry on "what is evolution?" compose a letter to yourself highlighting what you were right about and what you were wrong about or what was incomplete in your answer based on what you learned this semester. Also reflect on what you're still left wondering and how you could find the answers to your remaining questions.
Lecture Resources
·        Kitzmiller v. Dover Area School District
http://ncse.com/files/pub/legal/kitzmiller/highlights/2005-12-20_Kitzmiller_decision.pdf
You'd have to be science illiterate to think "believe in evolution" measures science literacy –Kahan (The Cultural Cognition Project)