Relying on the "experts"? An X-ample of the problem

There are many reasons why we must rely on expert advice in teaching, policy making, and understanding the world.  Too many aspects of modern life are just far too complicated for ordinary people to be sufficiently familiar with them.  Of course, experts are human and have their biases and limited knowledge, but we expect them to be forthcoming about areas of doubt, and to know at least the main outlines of their field.

When they don't, the arena for manipulating facts to serve vested interests is widened relative to what it should be.  Then policy is in limbo, is hijacked by those interests, or becomes essentially uninformed--the exact opposite of what is needed and expected.  The problem applies to scientists even within their own presumed areas of expertise.

Here's an example of this, from genetics, our own field.  The current issue of the prestigious (expert-driven?) American Journal of Human Genetics has a picture of 16 US 25-cent coins on the cover, some heads up and others tails up.  The picture is meant to illustrate a story about X-inactivation.

The dogma has been a phenomenon known as Lyonization, or X-chromosome inactivation: early in a female embryo, each cell randomly selects one of its two X chromosomes, and wraps it up tightly (so to speak) so that its genes cannot be activated.  Every descendant cell in the later embryo and through the individual's life is assumed to 'remember' which of its X's to activate and which to keep inactivated, so that an adult female is a mosaic--some patches in her tissues are expressing the variants of the X that she inherited from her father, while the other patches express those inherited from the X donated by her mother.

This means each female cell has one active X, and the idea was that this keeps gene dosage from the X in her cells compatible with the rest of the genome, since males only have one X. Since X-inactivation is random, roughly half a female's cells have paternal, and half maternal X activated.  Because X-inactivation occurs early and randomly, every female is different in terms of which patches of her cells are which.

Scientists needing melodrama rather than some dull picture of, say, actual chromosomes, the AJHG decided to illustrate probability with a coin.  The imaged theory is 8 Heads, 8 Tails.  But the cover story makes the point that evidence now shows that the two X's don't necessarily have an exactly 50-50 chance of being activated in a given cell.  So, if genes on one of the X's give a growth advantage, more of the female's body may be found to be expressing that one.  Similarly, if one X has damaging genes, fewer than half her cells will be found using that one.

This is interesting, and not surprising, even if it hadn't been documented as well in the past.  But what is surprising is that it is (or should be) by now well-known that Lyonization does not really work like this!  Indeed, various people including the lab of Dr Kateryna Makova here at Penn State, have shown that only part--around 85%--of the X is subject to inactivation.  In female cells both X's remain active for the other 15% (raising questions about the dosage-balance view in regard to the genes in those regions).  Indeed, there may be variation, even probabilistic variation from person to person or cell to cell, in which parts of the  X remain active, and one possibility is that this has to do with various bits of transposable (move-around-able) DNA that may have been inserted there over the ages past (a subject beyond this post).  Makova and colleagues have shown that the active regions seem to have been preserved by natural selection from varying as much as the regions subject to inactivation, presumably reflecting something about function, but beyond our point here.

This incomplete inactivation is entirely different from what the AJHG cover story is about.  But it's a leading journal, and it is publishing what it basically portrays as a surprising deviation from classical theory....without even acknowledging that the theory has already had a major revision well-known and prominently published.

This may be a minor point in the scope of science (but perhaps not in understanding chromosome and sex evolution!), but it shows how subtle can be the intercalation of misunderstanding (if not dogma) in science. We're not talking here about journalists' mistakes (except to the extent that, in the huge arena of major journals, editorial staff looking for cool cover pictures are people with journalism degrees rather than scientists).  The AJHG is one of the major journals in a highly sophisticated field, so one can imagine what the proliferating commercially driven hasty journals are like when it comes to reliability and accuracy.

We all are vulnerable to mistakes, so we're not particularly picking on this one, beyond making the point about the grip of dogma, the reliance on theory once learned but hard to relax, and the problem of anyone, even scientists, even in their own field, and teachers at all level, keeping up to date. It shows the extent to which even science is a cultural phenomenon, that involves lore as well as 'fact', but upon which opinions are framed and policy is made.

And speaking of imagery and dogma, by the way, why don't you try something:  take a handful of quarters, and flip them vigorously a number of times.  Do they actually come up half heads and half tails?  In fact, if you do enough flips, you would find that they don't.